Please have a look at the [certbot-dns-cloudflare documentation](https://certbot-dns-cloudflare.readthedocs.io/en/stable/) first. Procedure : - Edit domains in the compose file - Edit CloudFlare credentials in cloudflare.ini file (generate using https://dash.cloudflare.com/?to=/:account/profile/api-tokens) - Run certbot only and wait for certificates to be generated : `docker-compose up -d mycertbot` - When certificates are generated, run your services : `docker-compose up -d`