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If Semshi is set to opt plugin, when we run PackerUpdate, the command `: UpdateRemotePlugins` will be run. At this time, Semshi is not in the runtimepath, so its manifest will not be generated in rplugin.vim (located under ~/.local/share/nvim/rplugin.vim). So when we open a Python file afterwards, although Semshi is in runtimepath, but its manifest is missing, so we see error that command `Semshi enable` is not found.